Windows
gswin32 -dNOPAUSE -sDEVICE=pdfwrite -sOUTPUTFILE=Merged.pdf -dBATCH 1.pdf 2.pdf 3.pdf

Unix
gs -dNOPAUSE -sDEVICE=pdfwrite -sOUTPUTFILE=Merged.pdf -dBATCH 1.pdf 2.pdf 3.pdf